15 Gibson JD, Hunt GJ (2016) The complete mitochondrial genome of the invasive Africanized Honey Bee, Apis mellifera scutellata (Insecta: Hymenoptera: Apidae). Mitochondrial DNA, Apr; (DOI:10.3109/19401736.2014.905858)
14 Gibson JD, Arechavaleta-Velasco ME, Tsuruda JM, Hunt GJ (2015) Biased allele expression and aggression in hybrid honeybees may be influenced by inappropriate nuclear-cytoplasmic signaling. Frontiers in Genetics, Dec; 6 (DOI: 10.3389/fgene.2015.00343)
13 Kocher SD*, Tsuruda JM*, Gibson JD*, Emore CM, Arechavaleta-Velasco ME, Queller DC, Strassmann JE, Grozinger CM, Gribskov MR, San Miguel P, Westerman R, Hunt GJ (2015) A Search for Parent-of-Origin Effects on Honey Bee Gene Expression. G3: Genes| Genomes| Genetics, June; g3. 115.017814 (DOI: 10.1534/g3.115.017814)
12 Gibson JD*, Niehuis O*, Peirson B, Cash EI, Gadau J (2013) Genetic and developmental basis of F2 hybrid breakdown in Nasonia parasitoid wasps. Evolution, July; 67:2124-2132 (DOI: 10.1111/evo.12080)
11 Niehuis O*, Buellesbach J*, Gibson JD*#, Pothmann D, Hanner C, Mutti NS, Judson AK, Gadau J, Ruther J*, Schmitt T. (2013) Behavioural and genetic analyses on Nasonia shed light on the evolution of sex pheromones. Nature, Feb; 494: 345-348 (DOI:10.1038/nature11838)
*equal contribution; #responsible for molecular procedures.
10 Smith CR, Smith CD, Robertson HM…Gibson JD (18/45)…Gadau J. (2011) A draft genome of the red harvester ant, Pogonomyrmex barbatus: a model for reproductive division of labor and social complexity. Proceedings of the National Academy of Sciences (USA), Apr; 108:5667-5672 (DOI:10.1073/pnas.1007901108)
9 Smith CD, Abouheif E, Benton R…Gibson JD (12/50)…Tsutsui ND. (2011) The draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proceedings of the National Academy of Sciences (USA), Apr; 108:5673-5678 (DOI:10.1073/pnas.1008617108)
8 Suen G, Teiling C, Li L…Gibson JD (15/49)…Currie CR. (2011) The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genetics 7(2): e1002007. (DOI:10.1371/journal.pgen.1002007)
7 Gibson JD*, Niehuis O*, Verrelli BC, Gadau J. (2010) Contrasting patterns of selective constraints in nuclear encoded genes of the oxidative phosphorylation pathway in holometabolous insects and their possible role in hybrid breakdown in Nasonia. Heredity, Mar; 104:310-317 (DOI:10.1038/hdy.2009.172)
6 Beukeboom, LW, Niehuis O, Pannebakker BA, Koevoets T, Gibson JD, Shuker DM, van de Zande L, Gadau J. (2010) A comparison of recombination frequencies in intraspecific versus interspecific mapping populations of Nasonia. Heredity, Mar; 104:302-309 (DOI:10.1038/hdy.2009.185)
5 Kim J, Cunningham R, James B, Wyder S, Gibson JD, Niehuis O, Zdobnov EM, Robertson HM, Robinson GE, Werren JH, Sinha S. (2010) Functional Characterization of Transcription Factor Motifs Using Cross-species Comparison across Large Evolutionary Distances. PLoS Computational Biology, Jan; 6(1):e1000652 (DOI:10.1371/journal.pcbi.1000652)
4 Niehuis O, Gibson JD, Rosenberg MS, Pannebakker BA, Koevoets T, Judson AK, Desjardins CA, Kennedy K, Duggan D, Beukeboom LW, van de Zande L, Shuker DM, Werren JH, Gadau J. (2010) Recombination and Its Impact on the Genome of the Haplodiploid Parasitoid Wasp Nasonia. PLoS ONE, Jan; 5:e8597 (DOI: 10.1371/journal.pone.0008597)
3 Werren JH, Richards S, Desjardins CA…Gibson JD# (57/157)…Gibbs RA. (2010) Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species. Science, Jan 15; 327:343-348 (DOI: 10.1126/science.1178028)
#design and analysis of SNP genotyping microarray, gene annotation
2 Loomes KM, Stevens SA, O'Brien ML, Gonzalez DM, Ryan MJ, Segalov M, Dormans NJ, Mimoto MS, Gibson JD, Sewell W, Schaffer AA, Nah HD, Rappaport EF, Pratt SC, Dunwoodie SL, Kusumi K. (2007) Dll3 and Notch1 genetic interactions model axial segmental and craniofacial malformations of human birth defects. Developmental Dynamics, Oct; 236:2943-2951 (DOI: 10.1002/dvdy.21296)
1 William DA, Saitta B, Gibson JD, Traas J, Markov V, Gonzalez DM, Sewell W, Anderson DM, Pratt SC, Rappaport E, Kusumi K. (2007) Identification of oscillatory genes in somitogenesis from functional genomic analysis of a human mesenchymal stem cell model. Developmental Biology, May 1; 305:172-186 (DOI: 10.1016/j.ydbio.2007.02.007)
*equal contribution
14 Gibson JD, Arechavaleta-Velasco ME, Tsuruda JM, Hunt GJ (2015) Biased allele expression and aggression in hybrid honeybees may be influenced by inappropriate nuclear-cytoplasmic signaling. Frontiers in Genetics, Dec; 6 (DOI: 10.3389/fgene.2015.00343)
13 Kocher SD*, Tsuruda JM*, Gibson JD*, Emore CM, Arechavaleta-Velasco ME, Queller DC, Strassmann JE, Grozinger CM, Gribskov MR, San Miguel P, Westerman R, Hunt GJ (2015) A Search for Parent-of-Origin Effects on Honey Bee Gene Expression. G3: Genes| Genomes| Genetics, June; g3. 115.017814 (DOI: 10.1534/g3.115.017814)
12 Gibson JD*, Niehuis O*, Peirson B, Cash EI, Gadau J (2013) Genetic and developmental basis of F2 hybrid breakdown in Nasonia parasitoid wasps. Evolution, July; 67:2124-2132 (DOI: 10.1111/evo.12080)
11 Niehuis O*, Buellesbach J*, Gibson JD*#, Pothmann D, Hanner C, Mutti NS, Judson AK, Gadau J, Ruther J*, Schmitt T. (2013) Behavioural and genetic analyses on Nasonia shed light on the evolution of sex pheromones. Nature, Feb; 494: 345-348 (DOI:10.1038/nature11838)
*equal contribution; #responsible for molecular procedures.
10 Smith CR, Smith CD, Robertson HM…Gibson JD (18/45)…Gadau J. (2011) A draft genome of the red harvester ant, Pogonomyrmex barbatus: a model for reproductive division of labor and social complexity. Proceedings of the National Academy of Sciences (USA), Apr; 108:5667-5672 (DOI:10.1073/pnas.1007901108)
9 Smith CD, Abouheif E, Benton R…Gibson JD (12/50)…Tsutsui ND. (2011) The draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proceedings of the National Academy of Sciences (USA), Apr; 108:5673-5678 (DOI:10.1073/pnas.1008617108)
8 Suen G, Teiling C, Li L…Gibson JD (15/49)…Currie CR. (2011) The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genetics 7(2): e1002007. (DOI:10.1371/journal.pgen.1002007)
7 Gibson JD*, Niehuis O*, Verrelli BC, Gadau J. (2010) Contrasting patterns of selective constraints in nuclear encoded genes of the oxidative phosphorylation pathway in holometabolous insects and their possible role in hybrid breakdown in Nasonia. Heredity, Mar; 104:310-317 (DOI:10.1038/hdy.2009.172)
6 Beukeboom, LW, Niehuis O, Pannebakker BA, Koevoets T, Gibson JD, Shuker DM, van de Zande L, Gadau J. (2010) A comparison of recombination frequencies in intraspecific versus interspecific mapping populations of Nasonia. Heredity, Mar; 104:302-309 (DOI:10.1038/hdy.2009.185)
5 Kim J, Cunningham R, James B, Wyder S, Gibson JD, Niehuis O, Zdobnov EM, Robertson HM, Robinson GE, Werren JH, Sinha S. (2010) Functional Characterization of Transcription Factor Motifs Using Cross-species Comparison across Large Evolutionary Distances. PLoS Computational Biology, Jan; 6(1):e1000652 (DOI:10.1371/journal.pcbi.1000652)
4 Niehuis O, Gibson JD, Rosenberg MS, Pannebakker BA, Koevoets T, Judson AK, Desjardins CA, Kennedy K, Duggan D, Beukeboom LW, van de Zande L, Shuker DM, Werren JH, Gadau J. (2010) Recombination and Its Impact on the Genome of the Haplodiploid Parasitoid Wasp Nasonia. PLoS ONE, Jan; 5:e8597 (DOI: 10.1371/journal.pone.0008597)
3 Werren JH, Richards S, Desjardins CA…Gibson JD# (57/157)…Gibbs RA. (2010) Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species. Science, Jan 15; 327:343-348 (DOI: 10.1126/science.1178028)
#design and analysis of SNP genotyping microarray, gene annotation
2 Loomes KM, Stevens SA, O'Brien ML, Gonzalez DM, Ryan MJ, Segalov M, Dormans NJ, Mimoto MS, Gibson JD, Sewell W, Schaffer AA, Nah HD, Rappaport EF, Pratt SC, Dunwoodie SL, Kusumi K. (2007) Dll3 and Notch1 genetic interactions model axial segmental and craniofacial malformations of human birth defects. Developmental Dynamics, Oct; 236:2943-2951 (DOI: 10.1002/dvdy.21296)
1 William DA, Saitta B, Gibson JD, Traas J, Markov V, Gonzalez DM, Sewell W, Anderson DM, Pratt SC, Rappaport E, Kusumi K. (2007) Identification of oscillatory genes in somitogenesis from functional genomic analysis of a human mesenchymal stem cell model. Developmental Biology, May 1; 305:172-186 (DOI: 10.1016/j.ydbio.2007.02.007)
*equal contribution